IL_6I7O_396
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- AAUAAUG*CUAU
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6I7O_396 not in the Motif Atlas
- Homologous match to IL_5TBW_074
- Geometric discrepancy: 0.1028
- The information below is about IL_5TBW_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_49460.3
- Basepair signature
- cWW-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
6I7O|1|YQ|A|1883
6I7O|1|YQ|A|1884
6I7O|1|YQ|U|1885
6I7O|1|YQ|A|1886
6I7O|1|YQ|A|1887
6I7O|1|YQ|U|1888
6I7O|1|YQ|G|1889
*
6I7O|1|YQ|C|2346
6I7O|1|YQ|U|2347
6I7O|1|YQ|A|2348
6I7O|1|YQ|U|2349
Current chains
- Chain YQ
- 25S ribosomal RNA
Nearby chains
- Chain XX
- 60S ribosomal protein L17-A
- Chain YA
- 60S ribosomal protein L3
- Chain YC
- 60S ribosomal protein L31-A
Coloring options: