IL_6I7O_434

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CAAU*AGAACG

Length

10 nucleotides

Bulged bases

6I7O|1|YQ|A|3142, 6I7O|1|YQ|C|3143

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_434 not in the Motif Atlas

Homologous match to IL_8C3A_123

Geometric discrepancy: 0.1035

The information below is about IL_8C3A_123

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

6I7O|1|YQ|C|3004
6I7O|1|YQ|A|3005
6I7O|1|YQ|A|3006
6I7O|1|YQ|U|3007
*
6I7O|1|YQ|A|3139
6I7O|1|YQ|G|3140
6I7O|1|YQ|A|3141
6I7O|1|YQ|A|3142
6I7O|1|YQ|C|3143
6I7O|1|YQ|G|3144

Current chains

Chain YQ

25S ribosomal RNA

Nearby chains

Chain XU

60S ribosomal protein L16-A

Chain YA

60S ribosomal protein L3