IL_6IP5_050
3D structure
- PDB id
- 6IP5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 6IP5|1|1A|A|1650, 6IP5|1|1A|G|1654
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6IP5_050 not in the Motif Atlas
- Geometric match to IL_5TBW_028
- Geometric discrepancy: 0.1616
- The information below is about IL_5TBW_028
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.7
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
6IP5|1|1A|G|1522
6IP5|1|1A|A|1523
6IP5|1|1A|A|1524
6IP5|1|1A|A|1525
6IP5|1|1A|G|1526
*
6IP5|1|1A|C|1648
6IP5|1|1A|U|1649
6IP5|1|1A|A|1650
6IP5|1|1A|G|1651
6IP5|1|1A|U|1652
6IP5|1|1A|A|1653
6IP5|1|1A|G|1654
6IP5|1|1A|C|1655
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1F
- 60S ribosomal protein L4
- Chain 2F
- 60S ribosomal protein L13
- Chain 2H
- 60S ribosomal protein L15
- Chain 2U
- 60S ribosomal protein L27a
- Chain 2d
- 60S ribosomal protein L37
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