IL_6IP5_071
3D structure
- PDB id
- 6IP5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGCCCGAU*GG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6IP5_071 not in the Motif Atlas
- Homologous match to IL_8C3A_052
- Geometric discrepancy: 0.2155
- The information below is about IL_8C3A_052
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_84902.1
- Basepair signature
- cWW-L-cWW-L-L-R-cHH
- Number of instances in this motif group
- 2
Unit IDs
6IP5|1|1A|C|1911
6IP5|1|1A|G|1912
6IP5|1|1A|C|1913
6IP5|1|1A|C|1914
6IP5|1|1A|C|1915
6IP5|1|1A|G|1916
6IP5|1|1A|A|1917
6IP5|1|1A|U|1918
*
6IP5|1|1A|G|2064
6IP5|1|1A|G|2065
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 2A
- 60S ribosomal protein L7
- Chain 2I
- 60S ribosomal protein L13a
- Chain 2M
- 60S ribosomal protein L18a
- Chain 2Z
- 60S ribosomal protein L35a
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