IL_6IP5_077

3D structure

PDB id

6IP5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

6IP5|1|1A|A|1960

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP5_077 not in the Motif Atlas

Homologous match to IL_5TBW_054

Geometric discrepancy: 0.3243

The information below is about IL_5TBW_054

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

6IP5|1|1A|U|1957
6IP5|1|1A|A|1958
6IP5|1|1A|U|1959
6IP5|1|1A|A|1960
6IP5|1|1A|G|1961
6IP5|1|1A|A|1962
6IP5|1|1A|C|1963
6IP5|1|1A|A|1964
6IP5|1|1A|G|1965
*
6IP5|1|1A|C|2022
6IP5|1|1A|C|2023
6IP5|1|1A|G|2024
6IP5|1|1A|A|2025
6IP5|1|1A|A|2026

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2g

Ubiquitin-60S ribosomal protein L40