IL_6IP5_095
3D structure
- PDB id
- 6IP5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AACAAUG*CUAU
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6IP5_095 not in the Motif Atlas
- Homologous match to IL_8C3A_080
- Geometric discrepancy: 0.1429
- The information below is about IL_8C3A_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_49460.3
- Basepair signature
- cWW-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
6IP5|1|1A|A|2832
6IP5|1|1A|A|2833
6IP5|1|1A|C|2834
6IP5|1|1A|A|2835
6IP5|1|1A|A|2836
6IP5|1|1A|U|2837
6IP5|1|1A|G|2838
*
6IP5|1|1A|C|3850
6IP5|1|1A|U|3851
6IP5|1|1A|A|3852
6IP5|1|1A|U|3853
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1E
- 60S ribosomal protein L3
- Chain 2J
- 60S ribosomal protein L17
- Chain 2X
- 60S ribosomal protein L31
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