IL_6IP5_187

3D structure

PDB id

6IP5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

6IP5|1|2m|A|628, 6IP5|1|2m|U|630

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP5_187 not in the Motif Atlas

Homologous match to IL_4V88_415

Geometric discrepancy: 0.1997

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6IP5|1|2m|G|611
6IP5|1|2m|U|612
6IP5|1|2m|G|613
6IP5|1|2m|C|614
6IP5|1|2m|C|615
6IP5|1|2m|A|616
6IP5|1|2m|G|617
*
6IP5|1|2m|C|624
6IP5|1|2m|G|625
6IP5|1|2m|G|626
6IP5|1|2m|U|627
6IP5|1|2m|A|628
6IP5|1|2m|A|629
6IP5|1|2m|U|630
6IP5|1|2m|U|631
6IP5|1|2m|C|632

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2p

40S ribosomal protein S3

Chain 3B

40S ribosomal protein S23

Chain 3Q

40S ribosomal protein S30