IL_6IP5_213
3D structure
- PDB id
- 6IP5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 6IP5|1|2m|C|1215, 6IP5|1|2m|C|1216
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6IP5_213 not in the Motif Atlas
- Homologous match to IL_4V88_443
- Geometric discrepancy: 0.1688
- The information below is about IL_4V88_443
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.9
- Basepair signature
- cWW-cWS-cHS-L-cWW-tWH
- Number of instances in this motif group
- 15
Unit IDs
6IP5|1|2m|A|1214
6IP5|1|2m|C|1215
6IP5|1|2m|C|1216
6IP5|1|2m|A|1217
*
6IP5|1|2m|U|1681
6IP5|1|2m|C|1682
6IP5|1|2m|C|1683
6IP5|1|2m|C|1684
6IP5|1|2m|U|1685
Current chains
- Chain 2m
- 18S ribosomal RNA
Nearby chains
- Chain 2r
- 40S ribosomal protein S5
- Chain 2x
- 40S ribosomal protein S16
- Chain 3D
- 40S ribosomal protein S28
- Chain zu
- Transfer RNA; tRNA
- Chain zv
- mRNA
- Chain zy
- Transfer RNA; tRNA
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