IL_6IP5_259
3D structure
- PDB id
- 6IP5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 6IP5|1|2m|C|1331, 6IP5|1|2m|U|1494, 6IP5|1|2m|G|1497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6IP5_259 not in the Motif Atlas
- Homologous match to IL_8P9A_439
- Geometric discrepancy: 0.2864
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99893.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6IP5|1|2m|U|1329
6IP5|1|2m|G|1330
6IP5|1|2m|C|1331
6IP5|1|2m|A|1332
6IP5|1|2m|U|1333
6IP5|1|2m|G|1334
6IP5|1|2m|G|1335
*
6IP5|1|2m|U|1492
6IP5|1|2m|C|1493
6IP5|1|2m|U|1494
6IP5|1|2m|G|1495
6IP5|1|2m|U|1496
6IP5|1|2m|G|1497
6IP5|1|2m|A|1498
6IP5|1|2m|U|1499
6IP5|1|2m|G|1500
Current chains
- Chain 2m
- 18S ribosomal RNA
Nearby chains
- Chain 21
- 40S ribosomal protein S20
- Chain 2p
- 40S ribosomal protein S3
- Chain 2u
- 40S ribosomal protein S10
- Chain 3E
- 40S ribosomal protein S29
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