IL_6IP6_005
3D structure
- PDB id
- 6IP6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- CUGAAUUU*AUUAGUCAG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6IP6_005 not in the Motif Atlas
- Geometric match to IL_4WF9_008
- Geometric discrepancy: 0.2028
- The information below is about IL_4WF9_008
- Detailed Annotation
- 9x8 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_93502.1
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6IP6|1|1A|C|30
6IP6|1|1A|U|31
6IP6|1|1A|G|32
6IP6|1|1A|A|33
6IP6|1|1A|A|34
6IP6|1|1A|U|35
6IP6|1|1A|U|36
6IP6|1|1A|U|37
*
6IP6|1|1A|A|44
6IP6|1|1A|U|45
6IP6|1|1A|U|46
6IP6|1|1A|A|47
6IP6|1|1A|G|48
6IP6|1|1A|U|49
6IP6|1|1A|C|50
6IP6|1|1A|A|51
6IP6|1|1A|G|52
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 2F
- 60S ribosomal protein L13
- Chain 2H
- 60S ribosomal protein L15
- Chain 2U
- 60S ribosomal protein L27a
- Chain 2d
- 60S ribosomal protein L37
- Chain 2i
- 60S ribosomal protein L36a
Coloring options: