IL_6IP6_187

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

6IP6|1|2m|A|628

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP6_187 not in the Motif Atlas

Homologous match to IL_4V88_415

Geometric discrepancy: 0.1738

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6IP6|1|2m|G|611
6IP6|1|2m|U|612
6IP6|1|2m|G|613
6IP6|1|2m|C|614
6IP6|1|2m|C|615
6IP6|1|2m|A|616
6IP6|1|2m|G|617
*
6IP6|1|2m|C|624
6IP6|1|2m|G|625
6IP6|1|2m|G|626
6IP6|1|2m|U|627
6IP6|1|2m|A|628
6IP6|1|2m|A|629
6IP6|1|2m|U|630
6IP6|1|2m|U|631
6IP6|1|2m|C|632

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2p

40S ribosomal protein S3

Chain 3B

40S ribosomal protein S23

Chain 3Q

40S ribosomal protein S30