IL_6IP6_201

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GUAU*AGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP6_201 not in the Motif Atlas

Homologous match to IL_4V88_432

Geometric discrepancy: 0.1408

The information below is about IL_4V88_432

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6IP6|1|2m|G|942
6IP6|1|2m|U|943
6IP6|1|2m|A|944
6IP6|1|2m|U|945
*
6IP6|1|2m|A|981
6IP6|1|2m|G|982
6IP6|1|2m|A|983
6IP6|1|2m|C|984

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 1D

60S ribosomal protein L8

Chain 2o

40S ribosomal protein S3a

Chain 3L

40S ribosomal protein S14