IL_6IP6_218
3D structure
- PDB id
- 6IP6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- UGG*UCUGUGA
- Length
- 10 nucleotides
- Bulged bases
- 6IP6|1|2m|C|1493, 6IP6|1|2m|U|1494, 6IP6|1|2m|G|1497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6IP6_218 not in the Motif Atlas
- Homologous match to IL_4V88_451
- Geometric discrepancy: 0.4149
- The information below is about IL_4V88_451
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_97255.1
- Basepair signature
- cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
6IP6|1|2m|U|1333
6IP6|1|2m|G|1334
6IP6|1|2m|G|1335
*
6IP6|1|2m|U|1492
6IP6|1|2m|C|1493
6IP6|1|2m|U|1494
6IP6|1|2m|G|1495
6IP6|1|2m|U|1496
6IP6|1|2m|G|1497
6IP6|1|2m|A|1498
Current chains
- Chain 2m
- 18S ribosomal RNA
Nearby chains
- Chain 21
- 40S ribosomal protein S20
- Chain 2p
- 40S ribosomal protein S3
- Chain 2u
- 40S ribosomal protein S10
- Chain 3E
- 40S ribosomal protein S29
Coloring options: