IL_6IP6_226
3D structure
- PDB id
- 6IP6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- GUGCCUACC*GUAACC
- Length
- 15 nucleotides
- Bulged bases
- 6IP6|1|2m|C|1553, 6IP6|1|2m|C|1554, 6IP6|1|2m|C|1557, 6IP6|1|2m|A|1580
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6IP6_226 not in the Motif Atlas
- Homologous match to IL_8CRE_463
- Geometric discrepancy: 0.5259
- The information below is about IL_8CRE_463
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_22564.1
- Basepair signature
- cWW-L-R-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6IP6|1|2m|G|1550
6IP6|1|2m|U|1551
6IP6|1|2m|G|1552
6IP6|1|2m|C|1553
6IP6|1|2m|C|1554
6IP6|1|2m|U|1555
6IP6|1|2m|A|1556
6IP6|1|2m|C|1557
6IP6|1|2m|C|1558
*
6IP6|1|2m|G|1577
6IP6|1|2m|U|1578
6IP6|1|2m|A|1579
6IP6|1|2m|A|1580
6IP6|1|2m|C|1581
6IP6|1|2m|C|1582
Current chains
- Chain 2m
- 18S ribosomal RNA
Nearby chains
- Chain 21
- 40S ribosomal protein S20
- Chain 2p
- 40S ribosomal protein S3
- Chain 2u
- 40S ribosomal protein S10
- Chain 3E
- 40S ribosomal protein S29
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