IL_6IP8_022

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGUC*GC

Length

6 nucleotides

Bulged bases

6IP8|1|1A|G|483, 6IP8|1|1A|U|484

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP8_022 not in the Motif Atlas

Geometric match to IL_1NBS_009

Geometric discrepancy: 0.2755

The information below is about IL_1NBS_009

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

6IP8|1|1A|G|482
6IP8|1|1A|G|483
6IP8|1|1A|U|484
6IP8|1|1A|C|485
*
6IP8|1|1A|G|671
6IP8|1|1A|C|672

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2k

60S ribosomal protein L28