IL_6IP8_034

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

6IP8|1|1A|G|748, 6IP8|1|1A|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP8_034 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.1665

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6IP8|1|1A|G|745
6IP8|1|1A|A|746
6IP8|1|1A|A|747
6IP8|1|1A|G|748
6IP8|1|1A|G|749
6IP8|1|1A|U|750
6IP8|1|1A|G|751
6IP8|1|1A|G|752
*
6IP8|1|1A|U|911
6IP8|1|1A|G|912
6IP8|1|1A|U|913
6IP8|1|1A|U|914
6IP8|1|1A|A|915
6IP8|1|1A|C|916
6IP8|1|1A|A|917
6IP8|1|1A|G|918
6IP8|1|1A|C|919

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2G

60S ribosomal protein L14

Chain 2M

60S ribosomal protein L18a