IL_6IP8_076
3D structure
- PDB id
- 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UAUAGACAG*CCGAA
- Length
- 14 nucleotides
- Bulged bases
- 6IP8|1|1A|A|1960
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6IP8_076 not in the Motif Atlas
- Homologous match to IL_5TBW_054
- Geometric discrepancy: 0.3316
- The information below is about IL_5TBW_054
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90538.5
- Basepair signature
- cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
6IP8|1|1A|U|1957
6IP8|1|1A|A|1958
6IP8|1|1A|U|1959
6IP8|1|1A|A|1960
6IP8|1|1A|G|1961
6IP8|1|1A|A|1962
6IP8|1|1A|C|1963
6IP8|1|1A|A|1964
6IP8|1|1A|G|1965
*
6IP8|1|1A|C|2022
6IP8|1|1A|C|2023
6IP8|1|1A|G|2024
6IP8|1|1A|A|2025
6IP8|1|1A|A|2026
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 2M
- 60S ribosomal protein L18a
- Chain 2g
- Ubiquitin-60S ribosomal protein L40
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