IL_6IP8_082
3D structure
- PDB id
- 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUAGUAG*CGAAAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6IP8_082 not in the Motif Atlas
- Homologous match to IL_5TBW_061
- Geometric discrepancy: 0.1471
- The information below is about IL_5TBW_061
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_76042.3
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
6IP8|1|1A|G|2358
6IP8|1|1A|U|2359
6IP8|1|1A|A|2360
6IP8|1|1A|G|2361
6IP8|1|1A|U|2362
6IP8|1|1A|A|2363
6IP8|1|1A|G|2364
*
6IP8|1|1A|C|3858
6IP8|1|1A|G|3859
6IP8|1|1A|A|3860
6IP8|1|1A|A|3861
6IP8|1|1A|A|3862
6IP8|1|1A|C|3863
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1F
- 60S ribosomal protein L4
- Chain 2J
- 60S ribosomal protein L17
- Chain zx
- nascent peptide
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