IL_6IP8_134
3D structure
- PDB id
- 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUCAGUAC*GGAACCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6IP8_134 not in the Motif Atlas
- Geometric match to IL_5TBW_116
- Geometric discrepancy: 0.1389
- The information below is about IL_5TBW_116
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6IP8|1|1A|C|4596
6IP8|1|1A|U|4597
6IP8|1|1A|C|4598
6IP8|1|1A|A|4599
6IP8|1|1A|G|4600
6IP8|1|1A|U|4601
6IP8|1|1A|A|4602
6IP8|1|1A|C|4603
*
6IP8|1|1A|G|4608
6IP8|1|1A|G|4609
6IP8|1|1A|A|4610
6IP8|1|1A|A|4611
6IP8|1|1A|C|4612
6IP8|1|1A|C|4613
6IP8|1|1A|G|4614
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1E
- 60S ribosomal protein L3
- Chain 2C
- 60S ribosomal protein L9
- Chain 2P
- 60S ribosomal protein L23
- Chain 2g
- Ubiquitin-60S ribosomal protein L40
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