IL_6IP8_199
3D structure
- PDB id
- 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGGGG*CAAG
- Length
- 9 nucleotides
- Bulged bases
- 6IP8|1|2m|G|933
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6IP8_199 not in the Motif Atlas
- Geometric match to IL_4V88_431
- Geometric discrepancy: 0.1642
- The information below is about IL_4V88_431
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
6IP8|1|2m|C|931
6IP8|1|2m|G|932
6IP8|1|2m|G|933
6IP8|1|2m|G|934
6IP8|1|2m|G|935
*
6IP8|1|2m|C|1007
6IP8|1|2m|A|1008
6IP8|1|2m|A|1009
6IP8|1|2m|G|1010
Current chains
- Chain 2m
- 18S ribosomal RNA
Nearby chains
- Chain 2W
- 60S ribosomal protein L30
- Chain 2o
- 40S ribosomal protein S3a
- Chain 3C
- 40S ribosomal protein S26
- Chain 3K
- 40S ribosomal protein S13
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