IL_6IP8_200

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUAU*AGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP8_200 not in the Motif Atlas

Homologous match to IL_4V88_432

Geometric discrepancy: 0.1693

The information below is about IL_4V88_432

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6IP8|1|2m|G|942
6IP8|1|2m|U|943
6IP8|1|2m|A|944
6IP8|1|2m|U|945
*
6IP8|1|2m|A|981
6IP8|1|2m|G|982
6IP8|1|2m|A|983
6IP8|1|2m|C|984

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 1D

60S ribosomal protein L8

Chain 2o

40S ribosomal protein S3a

Chain 3C

40S ribosomal protein S26

Chain 3L

40S ribosomal protein S14