IL_6IP8_211
3D structure
- PDB id
- 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CACCA*UCCCUG
- Length
- 11 nucleotides
- Bulged bases
- 6IP8|1|2m|C|1215, 6IP8|1|2m|C|1216
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6IP8_211 not in the Motif Atlas
- Geometric match to IL_4V88_408
- Geometric discrepancy: 0.3978
- The information below is about IL_4V88_408
- Detailed Annotation
- C-loop with extra cWW pair
- Broad Annotation
- C-loop
- Motif group
- IL_11347.2
- Basepair signature
- cWW-cWW-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
6IP8|1|2m|C|1213
6IP8|1|2m|A|1214
6IP8|1|2m|C|1215
6IP8|1|2m|C|1216
6IP8|1|2m|A|1217
*
6IP8|1|2m|U|1681
6IP8|1|2m|C|1682
6IP8|1|2m|C|1683
6IP8|1|2m|C|1684
6IP8|1|2m|U|1685
6IP8|1|2m|G|1686
Current chains
- Chain 2m
- 18S ribosomal RNA
Nearby chains
- Chain 2r
- 40S ribosomal protein S5
- Chain 2x
- 40S ribosomal protein S16
- Chain 3D
- 40S ribosomal protein S28
- Chain zv
- mRNA
- Chain zy
- Transfer RNA; tRNA
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