3D structure

PDB id
6LKQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GUGCCAG*CGGUAAUAC
Length
16 nucleotides
Bulged bases
6LKQ|1|s|A|532, 6LKQ|1|s|U|534, 6LKQ|1|s|A|535
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6LKQ_025 not in the Motif Atlas
Geometric match to IL_4V88_415
Geometric discrepancy: 0.1756
The information below is about IL_4V88_415
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_54177.1
Basepair signature
cWW-cSW-tWH-L-R-L-R-tHS-cWW
Number of instances in this motif group
5

Unit IDs

6LKQ|1|s|G|515
6LKQ|1|s|U|516
6LKQ|1|s|G|517
6LKQ|1|s|C|518
6LKQ|1|s|C|519
6LKQ|1|s|A|520
6LKQ|1|s|G|521
*
6LKQ|1|s|C|528
6LKQ|1|s|G|529
6LKQ|1|s|G|530
6LKQ|1|s|U|531
6LKQ|1|s|A|532
6LKQ|1|s|A|533
6LKQ|1|s|U|534
6LKQ|1|s|A|535
6LKQ|1|s|C|536

Current chains

Chain s
16S ribosomal RNA

Nearby chains

Chain B
30S ribosomal protein S3
Chain C
30S ribosomal protein S4
Chain K
30S ribosomal protein S12
Chain z
Viomycin

Coloring options:


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