IL_6LKQ_129

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

6LKQ|1|t|A|1801, 6LKQ|1|t|C|1816, 6LKQ|1|t|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LKQ_129 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0924

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6LKQ|1|t|U|1798
6LKQ|1|t|G|1799
6LKQ|1|t|C|1800
6LKQ|1|t|A|1801
6LKQ|1|t|A|1802
6LKQ|1|t|A|1803
6LKQ|1|t|C|1804
*
6LKQ|1|t|G|1813
6LKQ|1|t|G|1814
6LKQ|1|t|A|1815
6LKQ|1|t|C|1816
6LKQ|1|t|G|1817
6LKQ|1|t|U|1818
6LKQ|1|t|A|1819
6LKQ|1|t|U|1820
6LKQ|1|t|A|1821

Current chains

Chain t

23S ribosomal RNA

Nearby chains

Chain U

50S ribosomal protein L2

Chain s

Small subunit ribosomal RNA; SSU rRNA