IL_6LKQ_156

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

6LKQ|1|t|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LKQ_156 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.0809

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

6LKQ|1|t|C|2636
6LKQ|1|t|U|2637
6LKQ|1|t|G|2638
6LKQ|1|t|A|2639
6LKQ|1|t|G|2640
*
6LKQ|1|t|C|2774
6LKQ|1|t|G|2775
6LKQ|1|t|A|2776
6LKQ|1|t|G|2777
6LKQ|1|t|A|2778
6LKQ|1|t|U|2779
6LKQ|1|t|G|2780
6LKQ|1|t|A|2781
6LKQ|1|t|G|2782

Current chains

Chain t

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L13

Chain V

50S ribosomal protein L3