IL_6LKQ_159

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGUUC*GGUAG

Length

10 nucleotides

Bulged bases

6LKQ|1|t|U|2689, 6LKQ|1|t|U|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LKQ_159 not in the Motif Atlas

Homologous match to IL_5J7L_348

Geometric discrepancy: 0.0922

The information below is about IL_5J7L_348

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

6LKQ|1|t|U|2687
6LKQ|1|t|G|2688
6LKQ|1|t|U|2689
6LKQ|1|t|U|2690
6LKQ|1|t|C|2691
*
6LKQ|1|t|G|2718
6LKQ|1|t|G|2719
6LKQ|1|t|U|2720
6LKQ|1|t|A|2721
6LKQ|1|t|G|2722

Current chains

Chain t

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L17

Chain 6

50S ribosomal protein L19

Chain V

50S ribosomal protein L3