IL_6LKQ_190

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUAGC*GCGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LKQ_190 not in the Motif Atlas

Geometric match to IL_5J7L_063

Geometric discrepancy: 0.3054

The information below is about IL_5J7L_063

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_80231.1

Basepair signature

cWW-L-R-L-R-L-R-tHS-cWW

Number of instances in this motif group

2

Unit IDs

6LKQ|1|t|U|1864
6LKQ|1|t|U|1865
6LKQ|1|t|A|1866
6LKQ|1|t|G|1867
6LKQ|1|t|C|1868
*
6LKQ|1|t|G|1873
6LKQ|1|t|C|1874
6LKQ|1|t|G|1875
6LKQ|1|t|A|1876
6LKQ|1|t|A|1877
6LKQ|1|t|G|1878

Current chains

Chain t

23S ribosomal RNA

Nearby chains