IL_6LQS_036

3D structure

PDB id

6LQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GG*CAGC

Length

6 nucleotides

Bulged bases

6LQS|1|SA|A|585, 6LQS|1|SA|G|586

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LQS_036 not in the Motif Atlas

Geometric match to IL_3IGI_013

Geometric discrepancy: 0.2435

The information below is about IL_3IGI_013

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

6LQS|1|SA|G|551
6LQS|1|SA|G|552
*
6LQS|1|SA|C|584
6LQS|1|SA|A|585
6LQS|1|SA|G|586
6LQS|1|SA|C|587

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain 5D

U3 small nucleolar RNA-associated protein 11

Chain 5H

Something about silencing protein 10

Chain RJ

Ribosome biogenesis protein BMS1