3D structure

PDB id
6LQS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of 90S small subunit preribosomes in transition states (State D)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CUUU*AUGG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6LQS_045 not in the Motif Atlas
Geometric match to IL_5EW4_002
Geometric discrepancy: 0.2921
The information below is about IL_5EW4_002
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_85033.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
35

Unit IDs

6LQS|1|SA|C|747
6LQS|1|SA|U|748
6LQS|1|SA|U|749
6LQS|1|SA|U|750
*
6LQS|1|SA|A|799
6LQS|1|SA|U|800
6LQS|1|SA|G|801
6LQS|1|SA|G|802

Current chains

Chain SA
18S pre-rRNA

Nearby chains

Chain RP
U3 small nucleolar RNA-associated protein 20
Chain SF
40S ribosomal protein S4-A
Chain SM
40S ribosomal protein S11-A
Chain SX
40S ribosomal protein S22-B

Coloring options:


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