IL_6LQS_054
3D structure
- PDB id
- 6LQS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S small subunit preribosomes in transition states (State D)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 6LQS|1|SA|C|1158, 6LQS|1|SA|C|1159
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6LQS_054 not in the Motif Atlas
- Homologous match to IL_4V88_443
- Geometric discrepancy: 0.2075
- The information below is about IL_4V88_443
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.9
- Basepair signature
- cWW-cWS-cHS-L-cWW-tWH
- Number of instances in this motif group
- 15
Unit IDs
6LQS|1|SA|A|1157
6LQS|1|SA|C|1158
6LQS|1|SA|C|1159
6LQS|1|SA|A|1160
*
6LQS|1|SA|U|1617
6LQS|1|SA|C|1618
6LQS|1|SA|C|1619
6LQS|1|SA|C|1620
6LQS|1|SA|U|1621
Current chains
- Chain SA
- 18S pre-rRNA
Nearby chains
- Chain 5G
- U3 small nucleolar ribonucleoprotein protein IMP4
- Chain B1
- Periodic tryptophan protein 2
- Chain B2
- U3 small nucleolar RNA-associated protein 12
- Chain SG
- 40S ribosomal protein S5
- Chain SR
- 40S ribosomal protein S16-A
- Chain Sd
- 40S ribosomal protein S28-A
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