IL_6LQT_045
3D structure
- PDB id
- 6LQT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S small subunit preribosomes in transition states (State E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.9 Å
Loop
- Sequence
- CUUU*AUGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6LQT_045 not in the Motif Atlas
- Geometric match to IL_5EW4_002
- Geometric discrepancy: 0.2921
- The information below is about IL_5EW4_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
6LQT|1|SA|C|747
6LQT|1|SA|U|748
6LQT|1|SA|U|749
6LQT|1|SA|U|750
*
6LQT|1|SA|A|799
6LQT|1|SA|U|800
6LQT|1|SA|G|801
6LQT|1|SA|G|802
Current chains
- Chain SA
- 18S pre-rRNA
Nearby chains
- Chain RP
- U3 small nucleolar RNA-associated protein 20
- Chain SF
- 40S ribosomal protein S4-A
- Chain SM
- 40S ribosomal protein S11-A
- Chain SX
- 40S ribosomal protein S22-B
Coloring options: