IL_6LQU_039

3D structure

PDB id

6LQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UCGU*AA

Length

6 nucleotides

Bulged bases

6LQU|1|SA|C|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LQU_039 not in the Motif Atlas

Homologous match to IL_4V88_392

Geometric discrepancy: 0.3157

The information below is about IL_4V88_392

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

6LQU|1|SA|U|113
6LQU|1|SA|C|114
6LQU|1|SA|G|115
6LQU|1|SA|U|116
*
6LQU|1|SA|A|300
6LQU|1|SA|A|301

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain SF

40S ribosomal protein S4-A

Chain SJ

40S ribosomal protein S8-A

Chain SM

40S ribosomal protein S11-A