IL_6LSR_122
3D structure
- PDB id
- 6LSR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a pre-60S ribosomal subunit - state B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.13 Å
Loop
- Sequence
- U(B8H)GA*UACA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: B8H
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6LSR_122 not in the Motif Atlas
- Homologous match to IL_8P9A_327
- Geometric discrepancy: 0.248
- The information below is about IL_8P9A_327
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
6LSR|1|2|U|4295
6LSR|1|2|B8H|4296
6LSR|1|2|G|4297
6LSR|1|2|A|4298
*
6LSR|1|2|U|4312
6LSR|1|2|A|4313
6LSR|1|2|C|4314
6LSR|1|2|A|4315
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L29
- Chain W
- 60S ribosomal protein L36a
- Chain Z
- 60S ribosomal protein L18
- Chain c
- 60S ribosomal protein L21
- Chain r
- 60S ribosomal protein L5
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