IL_6LSR_183

3D structure

PDB id

6LSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

UGUA(PSU)(OMG)*CGAAG

Length

11 nucleotides

Bulged bases

6LSR|1|2|U|4634, 6LSR|1|2|PSU|4636

QA status

Modified nucleotides: PSU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LSR_183 not in the Motif Atlas

Homologous match to IL_8C3A_127

Geometric discrepancy: 0.4416

The information below is about IL_8C3A_127

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

6LSR|1|2|U|4632
6LSR|1|2|G|4633
6LSR|1|2|U|4634
6LSR|1|2|A|4635
6LSR|1|2|PSU|4636
6LSR|1|2|OMG|4637
*
6LSR|1|2|C|4662
6LSR|1|2|G|4663
6LSR|1|2|A|4664
6LSR|1|2|A|4665
6LSR|1|2|G|4666

Current chains

Chain 2

28S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain T

60S ribosomal protein L31

Chain f

60S ribosomal protein L24