IL_6M62_064
3D structure
- PDB id
- 6M62 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGGAAUU*GGAGAUG
- Length
- 14 nucleotides
- Bulged bases
- 6M62|1|1|U|1716, 6M62|1|1|A|1729
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6M62_064 not in the Motif Atlas
- Homologous match to IL_5TBW_073
- Geometric discrepancy: 0.1152
- The information below is about IL_5TBW_073
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_60192.2
- Basepair signature
- cWW-tSH-tSH-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
6M62|1|1|C|1711
6M62|1|1|G|1712
6M62|1|1|G|1713
6M62|1|1|A|1714
6M62|1|1|A|1715
6M62|1|1|U|1716
6M62|1|1|U|1717
*
6M62|1|1|G|1727
6M62|1|1|G|1728
6M62|1|1|A|1729
6M62|1|1|G|1730
6M62|1|1|A|1731
6M62|1|1|U|1732
6M62|1|1|G|1733
Current chains
- Chain 1
- RDN25-1 rRNA
Nearby chains
- Chain R
- 60S ribosomal protein L19-A
- Chain Z
- 60S ribosomal protein L27-A
- Chain c
- 60S ribosomal protein L30
- Chain g
- 60S ribosomal protein L34-A
- Chain p
- 60S ribosomal protein L43-A
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