IL_6M62_092

3D structure

PDB id

6M62 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAU*AGAACG

Length

10 nucleotides

Bulged bases

6M62|1|1|A|3142, 6M62|1|1|C|3143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6M62_092 not in the Motif Atlas

Homologous match to IL_8C3A_123

Geometric discrepancy: 0.1076

The information below is about IL_8C3A_123

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

6M62|1|1|C|3004
6M62|1|1|A|3005
6M62|1|1|A|3006
6M62|1|1|U|3007
*
6M62|1|1|A|3139
6M62|1|1|G|3140
6M62|1|1|A|3141
6M62|1|1|A|3142
6M62|1|1|C|3143
6M62|1|1|G|3144

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain O

60S ribosomal protein L16-A