IL_6M62_109

3D structure

PDB id

6M62 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUA*UUAAGC

Length

9 nucleotides

Bulged bases

6M62|1|1|G|3377

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6M62_109 not in the Motif Atlas

Homologous match to IL_8C3A_138

Geometric discrepancy: 0.0985

The information below is about IL_8C3A_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6M62|1|1|G|3328
6M62|1|1|U|3329
6M62|1|1|A|3330
*
6M62|1|1|U|3373
6M62|1|1|U|3374
6M62|1|1|A|3375
6M62|1|1|A|3376
6M62|1|1|G|3377
6M62|1|1|C|3378

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain d

60S ribosomal protein L31-A

Chain u

Ribosome biogenesis protein RLP24