IL_6N1D_021

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

6N1D|1|A16S|A|532, 6N1D|1|A16S|U|534

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_021 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.269

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6N1D|1|A16S|G|515
6N1D|1|A16S|U|516
6N1D|1|A16S|G|517
6N1D|1|A16S|C|518
6N1D|1|A16S|C|519
6N1D|1|A16S|A|520
6N1D|1|A16S|G|521
*
6N1D|1|A16S|C|528
6N1D|1|A16S|G|529
6N1D|1|A16S|G|530
6N1D|1|A16S|U|531
6N1D|1|A16S|A|532
6N1D|1|A16S|A|533
6N1D|1|A16S|U|534
6N1D|1|A16S|A|535
6N1D|1|A16S|C|536

Current chains

Chain A16S

16S rRNA

Nearby chains

Chain AS03

30S ribosomal protein S3

Chain AS04

30S ribosomal protein S4

Chain AS12

30S ribosomal protein S12