IL_6N1D_161

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UUUCC*GGUAG

Length

10 nucleotides

Bulged bases

6N1D|1|A23S|U|2689, 6N1D|1|A23S|C|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_161 not in the Motif Atlas

Homologous match to IL_7A0S_096

Geometric discrepancy: 0.1694

The information below is about IL_7A0S_096

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

6N1D|1|A23S|U|2687
6N1D|1|A23S|U|2688
6N1D|1|A23S|U|2689
6N1D|1|A23S|C|2690
6N1D|1|A23S|C|2691
*
6N1D|1|A23S|G|2718
6N1D|1|A23S|G|2719
6N1D|1|A23S|U|2720
6N1D|1|A23S|A|2721
6N1D|1|A23S|G|2722

Current chains

Chain A23S

23S rRNA

Nearby chains

Chain AL03

50S ribosomal protein L3

Chain AL17

50S ribosomal protein L17

Chain AL19

50S ribosomal protein L19