IL_6N1D_200

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAGAG*UGGU

Length

9 nucleotides

Bulged bases

6N1D|1|B16S|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_200 not in the Motif Atlas

Homologous match to IL_6CZR_141

Geometric discrepancy: 0.1352

The information below is about IL_6CZR_141

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

6N1D|1|B16S|G|662
6N1D|1|B16S|A|663
6N1D|1|B16S|G|664
6N1D|1|B16S|A|665
6N1D|1|B16S|G|666
*
6N1D|1|B16S|U|740
6N1D|1|B16S|G|741
6N1D|1|B16S|G|742
6N1D|1|B16S|U|743

Current chains

Chain B16S

16S rRNA

Nearby chains

Chain BS06

30S ribosomal protein S6

Chain BS15

30S ribosomal protein S15

Chain BS18

30S ribosomal protein S18