IL_6N1D_236
3D structure
- PDB id
- 6N1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GGGAG*CGUGGAUC
- Length
- 13 nucleotides
- Bulged bases
- 6N1D|1|B23S|G|101
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N1D_236 not in the Motif Atlas
- Homologous match to IL_7A0S_004
- Geometric discrepancy: 0.2911
- The information below is about IL_7A0S_004
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_94910.1
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
6N1D|1|B23S|G|81
6N1D|1|B23S|G|82
6N1D|1|B23S|G|83
6N1D|1|B23S|A|84
6N1D|1|B23S|G|85
*
6N1D|1|B23S|C|97
6N1D|1|B23S|G|98
6N1D|1|B23S|U|99
6N1D|1|B23S|G|101
6N1D|1|B23S|G|102
6N1D|1|B23S|A|103
6N1D|1|B23S|U|104
6N1D|1|B23S|C|105
Current chains
- Chain B23S
- 23S rRNA
Nearby chains
- Chain BL24
- 50S ribosomal protein L24
- Chain BL29
- 50S ribosomal protein L29
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