IL_6N1D_271
3D structure
- PDB id
- 6N1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GAUG*CGC
- Length
- 7 nucleotides
- Bulged bases
- 6N1D|1|B23S|U|1033
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N1D_271 not in the Motif Atlas
- Homologous match to IL_5J7L_282
- Geometric discrepancy: 0.1488
- The information below is about IL_5J7L_282
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_57744.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 22
Unit IDs
6N1D|1|B23S|G|1031
6N1D|1|B23S|A|1032
6N1D|1|B23S|U|1033
6N1D|1|B23S|G|1034
*
6N1D|1|B23S|C|1121
6N1D|1|B23S|G|1122
6N1D|1|B23S|C|1123
Current chains
- Chain B23S
- 23S rRNA
Nearby chains
- Chain B5S
- 5S ribosomal RNA; 5S rRNA
- Chain BL06
- 50S ribosomal protein L6
- Chain BL16
- 50S ribosomal protein L16
- Chain BL36
- 50S ribosomal protein L36
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