IL_6N1D_306

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

6N1D|1|B23S|A|1938, 6N1D|1|B23S|U|1944, 6N1D|1|B23S|U|1963

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_306 not in the Motif Atlas

Homologous match to IL_4WF9_077

Geometric discrepancy: 0.1645

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

6N1D|1|B23S|C|1934
6N1D|1|B23S|G|1935
6N1D|1|B23S|A|1936
6N1D|1|B23S|A|1937
6N1D|1|B23S|A|1938
6N1D|1|B23S|U|1939
6N1D|1|B23S|U|1940
6N1D|1|B23S|C|1941
6N1D|1|B23S|C|1942
6N1D|1|B23S|U|1943
6N1D|1|B23S|U|1944
6N1D|1|B23S|G|1945
*
6N1D|1|B23S|C|1961
6N1D|1|B23S|C|1962
6N1D|1|B23S|U|1963
6N1D|1|B23S|G|1964

Current chains

Chain B23S

23S rRNA

Nearby chains

Chain B16S

Small subunit ribosomal RNA; SSU rRNA

Chain BL02

50S ribosomal protein L2