3D structure

PDB id
6N8J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
UCUAGACAG*CCGAA
Length
14 nucleotides
Bulged bases
6N8J|1|1|A|1221
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6N8J_046 not in the Motif Atlas
Homologous match to IL_5TBW_054
Geometric discrepancy: 0.2297
The information below is about IL_5TBW_054
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_90538.5
Basepair signature
cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L
Number of instances in this motif group
6

Unit IDs

6N8J|1|1|U|1218
6N8J|1|1|C|1219
6N8J|1|1|U|1220
6N8J|1|1|A|1221
6N8J|1|1|G|1222
6N8J|1|1|A|1223
6N8J|1|1|C|1224
6N8J|1|1|A|1225
6N8J|1|1|G|1226
*
6N8J|1|1|C|1283
6N8J|1|1|C|1284
6N8J|1|1|G|1285
6N8J|1|1|A|1286
6N8J|1|1|A|1287

Current chains

Chain 1
Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain S
60S ribosomal protein L20-A
Chain W
Ribosome assembly factor MRT4

Coloring options:


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