IL_6N8J_098
3D structure
- PDB id
- 6N8J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CUUAGUAC*GGAACAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N8J_098 not in the Motif Atlas
- Geometric match to IL_5TBW_116
- Geometric discrepancy: 0.1544
- The information below is about IL_5TBW_116
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6N8J|1|1|C|3018
6N8J|1|1|U|3019
6N8J|1|1|U|3020
6N8J|1|1|A|3021
6N8J|1|1|G|3022
6N8J|1|1|U|3023
6N8J|1|1|A|3024
6N8J|1|1|C|3025
*
6N8J|1|1|G|3030
6N8J|1|1|G|3031
6N8J|1|1|A|3032
6N8J|1|1|A|3033
6N8J|1|1|C|3034
6N8J|1|1|A|3035
6N8J|1|1|G|3036
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain H
- 60S ribosomal protein L9-A
- Chain V
- 60S ribosomal protein L23-A
- Chain b
- Nucleolar GTP-binding protein 1
- Chain r
- Ribosome biogenesis protein NSA2
- Chain y
- Eukaryotic translation initiation factor 6
- Chain z
- UPF0642 protein YBL028C
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