IL_6N8J_142
3D structure
- PDB id
- 6N8J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UCUUC*GGAAUA
- Length
- 11 nucleotides
- Bulged bases
- 6N8J|1|1|U|1629, 6N8J|1|1|U|1815
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N8J_142 not in the Motif Atlas
- Homologous match to IL_8CRE_071
- Geometric discrepancy: 0.1749
- The information below is about IL_8CRE_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_56317.1
- Basepair signature
- cWW-L-R-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6N8J|1|1|U|1627
6N8J|1|1|C|1628
6N8J|1|1|U|1629
6N8J|1|1|U|1630
6N8J|1|1|C|1631
*
6N8J|1|1|G|1811
6N8J|1|1|G|1812
6N8J|1|1|A|1813
6N8J|1|1|A|1814
6N8J|1|1|U|1815
6N8J|1|1|A|1816
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain Z
- 60S ribosomal protein L27-A
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