IL_6NUO_209

3D structure

PDB id

6NUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NUO_209 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.0767

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

6NUO|1|XA|G|887
6NUO|1|XA|G|888
6NUO|1|XA|A|889
6NUO|1|XA|G|890
6NUO|1|XA|U|891
6NUO|1|XA|A|892
6NUO|1|XA|C|893
6NUO|1|XA|G|894
*
6NUO|1|XA|U|905
6NUO|1|XA|G|906
6NUO|1|XA|A|907
6NUO|1|XA|A|908
6NUO|1|XA|A|909
6NUO|1|XA|C|910

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XL

30S ribosomal protein S12

Chain XQ

30S ribosomal protein S17