IL_6NUO_271

3D structure

PDB id

6NUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

6NUO|1|YA|A|1202

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NUO_271 not in the Motif Atlas

Homologous match to IL_4WF9_036

Geometric discrepancy: 0.0837

The information below is about IL_4WF9_036

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

6NUO|1|YA|C|1044
6NUO|1|YA|U|1045
6NUO|1|YA|A|1046
6NUO|1|YA|A|1047
6NUO|1|YA|G|1048
*
6NUO|1|YA|C|1199
6NUO|1|YA|G|1200
6NUO|1|YA|A|1201
6NUO|1|YA|A|1202
6NUO|1|YA|G|1203

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y3

50S ribosomal protein L30

Chain YB

5S ribosomal RNA; 5S rRNA

Chain YU

50S ribosomal protein L20

Chain YV

50S ribosomal protein L21