3D structure

PDB id
6NUO (explore in PDB, NAKB, or RNA 3D Hub)
Description
Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CGAUGGUAC*GAGAGUAGG
Length
18 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6NUO_353 not in the Motif Atlas
Homologous match to IL_7A0S_106
Geometric discrepancy: 0.1164
The information below is about IL_7A0S_106
Detailed Annotation
Bacterial 5S Loop E
Broad Annotation
Loop E
Motif group
IL_71138.1
Basepair signature
cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
Number of instances in this motif group
3

Unit IDs

6NUO|1|YB|C|71
6NUO|1|YB|G|72
6NUO|1|YB|A|73
6NUO|1|YB|U|74
6NUO|1|YB|G|75
6NUO|1|YB|G|76
6NUO|1|YB|U|77
6NUO|1|YB|A|78
6NUO|1|YB|C|79
*
6NUO|1|YB|G|98
6NUO|1|YB|A|99
6NUO|1|YB|G|100
6NUO|1|YB|A|101
6NUO|1|YB|G|102
6NUO|1|YB|U|103
6NUO|1|YB|A|104
6NUO|1|YB|G|105
6NUO|1|YB|G|106

Current chains

Chain YB
5S rRNA

Nearby chains

Chain YA
Large subunit ribosomal RNA; LSU rRNA
Chain YQ
50S ribosomal protein L16
Chain YZ
50S ribosomal protein L25

Coloring options:


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