IL_6O90_076

3D structure

PDB id

6O90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class05

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CGAAAUUCCUUG*CCCG

Length

16 nucleotides

Bulged bases

6O90|1|A|A|1952, 6O90|1|A|U|1958, 6O90|1|A|C|1977

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O90_076 not in the Motif Atlas

Geometric match to IL_4WF9_077

Geometric discrepancy: 0.1444

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.1

Basepair signature

cWW-L-R-cHW-cWW-L-L-tSW-L

Number of instances in this motif group

8

Unit IDs

6O90|1|A|C|1948
6O90|1|A|G|1949
6O90|1|A|A|1950
6O90|1|A|A|1951
6O90|1|A|A|1952
6O90|1|A|U|1953
6O90|1|A|U|1954
6O90|1|A|C|1955
6O90|1|A|C|1956
6O90|1|A|U|1957
6O90|1|A|U|1958
6O90|1|A|G|1959
*
6O90|1|A|C|1975
6O90|1|A|C|1976
6O90|1|A|C|1977
6O90|1|A|G|1978

Current chains

Chain A

23S rRNA

Nearby chains

Chain a

Small subunit ribosomal RNA; SSU rRNA